Illumina whole genome shotgun sequencing of metagenomic paired-end li... - SRA

SRX952404: Illumina whole genome shotgun sequencing of metagenomic paired-end library 'Pond-267194' containing sample '3101436' from individual 'E003989'
3 ILLUMINA (Illumina HiSeq 2000) runs: 12M spots, 2.4G bases, 1.5Gb downloads

UUID: 90f6e6d0-f0d3-4100-95e1-1c970a2fdc47

Design: Illumina sequencing of human gut metagenome via random selection

Submitted by: Broad Institute (BI)

Study: A prospective, longitudinal analysis of the developing gut microbiome in infants en route to type 1 diabetes

PRJNA231909 • SRP056054 • All experiments • All runs

show Abstracthide Abstract

This is a prospective, longitudinal collection of stool samples from infants at risk for disease. Infants from Finland and Estonia were recruited at birth based on HLA risk genotyping. Parents collected their infants' stool at approximately monthly intervals and promptly stored the sample in the freezer prior to shipment for sample processing and sequencing. The cohort comprised of 33 infants, 11 of which seroconverted to serum autoantibody positivity and of those, four developed T1D within the three year time-frame of this study.

Sample: Generic sample from human gut metagenome

SAMN03398792 • SRS871214 • All experiments • All runs

Organism: human gut metagenome

Library:

Name: Pond-267194

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: METAGENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithoutReference

data_type: WGS

gssr_id: 377783.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:4QJ42

material_type: DNA:DNA Genomic

product_order: PDO-1810

product_part_number: P-WG-0004

project: G45231

research_project: RP-315

root_sample_id: SM-3T28J

sample_id: SM-4QJ42

work_request: 37603

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-09-13 02:06:43.0	GAPipeline	RTA1.17.21.3	Sequencer Application 2.1.35.0

Runs: 3 runs, 12M spots, 2.4G bases, 1.5Gb

Run	# of Spots	# of Bases	Size	Published
SRR1910718	3,997,279	807.5M	493.7Mb	2015-03-12
SRR1910914	3,993,879	806.8M	495.6Mb	2015-03-12
SRR1915875	4,040,612	816.2M	501Mb	2015-03-13

ID:: 1352971

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